Variant report

Variant	rs17390355
Chromosome Location	chr7:78479384-78479385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17455327	0.80[CEU][hapmap]
rs17455348	0.82[CEU][hapmap]
rs17469166	0.89[CEU][hapmap]
rs521851	0.92[EUR][1000 genomes]
rs6951658	1.00[CEU][hapmap]
rs6951989	0.90[CEU][hapmap]
rs6957268	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143039	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73143040	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73143043	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73143055	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73143059	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78478600-78480800	Enhancers	HSMMtube	muscle
2	chr7:78478600-78484600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:78478600-78484600	Enhancers	HSMM	muscle
4	chr7:78479200-78479600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:78479200-78480000	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78479200-78480200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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