Variant report

Variant	rs17392688
Chromosome Location	chr1:78708919-78708920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1570443	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1570444	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17101412	0.86[EUR][1000 genomes]
rs17101479	0.86[EUR][1000 genomes]
rs17101491	0.86[EUR][1000 genomes]
rs17389676	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17390321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2351911	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4650379	0.86[EUR][1000 genomes]
rs4650453	0.86[EUR][1000 genomes]
rs4650514	0.86[EUR][1000 genomes]
rs4650584	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4650585	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4650588	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4650609	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4650624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7364565	1.00[EUR][1000 genomes]
rs7365402	1.00[EUR][1000 genomes]
rs7367149	1.00[EUR][1000 genomes]
rs7367922	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3388354	chr1:78708489-78712687	Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78707200-78722600	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links