Variant report

Variant	rs1739317
Chromosome Location	chr6:24948101-24948102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs586557	1.00[ASN][1000 genomes]
rs599699	1.00[ASN][1000 genomes]
rs604926	1.00[ASN][1000 genomes]
rs604945	1.00[ASN][1000 genomes]
rs614837	1.00[ASN][1000 genomes]
rs614900	1.00[ASN][1000 genomes]
rs73382348	1.00[ASN][1000 genomes]
rs73382352	1.00[ASN][1000 genomes]
rs7738180	1.00[ASN][1000 genomes]
rs7775482	1.00[ASN][1000 genomes]
rs7775697	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv275111	chr6:24946671-24951199	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24944800-24949200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:24946200-24949000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:24946400-24951600	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:24946600-24949200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:24946800-24948200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:24946800-24949200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:24947000-24948400	Weak transcription	Fetal Thymus	thymus
8	chr6:24947400-24949400	Enhancers	Primary T cells from cord blood	blood
9	chr6:24947600-24949000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:24947600-24949000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:24947600-24949000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:24947600-24949000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:24947600-24949200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:24947600-24949800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:24947800-24948200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:24947800-24948400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:24947800-24949400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:24947800-24949600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:24947800-24953600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:24948000-24948200	Weak transcription	Primary B cells from cord blood	blood
21	chr6:24948000-24948200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:24948000-24948400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:24948000-24948400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:24948000-24949000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:24948000-24949200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:24948000-24949600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links