Variant report

Variant	rs17393472
Chromosome Location	chr15:77765429-77765430
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77764733..77766435-chr15:77770459..77771989,2	MCF-7	breast:
2	chr15:77761327..77763010-chr15:77763652..77766494,2	K562	blood:
3	chr15:77764294..77766424-chr15:77768357..77770654,2	K562	blood:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17470307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77748200-77766800	Weak transcription	Aorta	Aorta
2	chr15:77748400-77770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:77749000-77770400	Weak transcription	Spleen	Spleen
4	chr15:77750000-77766400	Weak transcription	Psoas Muscle	Psoas
5	chr15:77750000-77770400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:77750200-77767000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:77750400-77777800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr15:77750600-77777800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:77750600-77779200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:77750600-77779600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:77750800-77768200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:77750800-77768200	Strong transcription	Liver	Liver
13	chr15:77750800-77768200	Strong transcription	Fetal Intestine Large	intestine
14	chr15:77750800-77768400	Strong transcription	Primary T cells from cord blood	blood
15	chr15:77750800-77780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:77751000-77766200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:77751000-77768600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:77751000-77770600	Weak transcription	Gastric	stomach
19	chr15:77751000-77770600	Weak transcription	Right Atrium	heart
20	chr15:77751000-77773600	Weak transcription	Stomach Mucosa	stomach
21	chr15:77753400-77777600	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr15:77753600-77766600	Strong transcription	GM12878-XiMat	blood
23	chr15:77754000-77767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:77755000-77768600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:77755200-77768000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr15:77755200-77775600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr15:77755400-77766000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:77755400-77768200	Strong transcription	Primary B cells from cord blood	blood
29	chr15:77755400-77777800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr15:77755600-77765600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:77755600-77766000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:77755600-77766200	Strong transcription	Placenta	Placenta
33	chr15:77755600-77768600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:77755600-77770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:77755800-77767800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:77756200-77778400	Strong transcription	Fetal Thymus	thymus
37	chr15:77756800-77775800	Weak transcription	Pancreas	Pancrea
38	chr15:77757200-77767600	Weak transcription	Brain Angular Gyrus	brain
39	chr15:77757200-77770400	Weak transcription	Esophagus	oesophagus
40	chr15:77757200-77771200	Weak transcription	Colonic Mucosa	Colon
41	chr15:77757200-77774200	Weak transcription	NHLF	lung
42	chr15:77758600-77766000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:77758800-77765600	Strong transcription	Dnd41	blood
44	chr15:77759000-77765600	Strong transcription	HSMM	muscle
45	chr15:77759000-77766000	Strong transcription	Fetal Kidney	kidney
46	chr15:77759200-77771600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr15:77759200-77776000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:77759400-77770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:77759600-77765800	Weak transcription	Fetal Heart	heart
50	chr15:77759600-77769400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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