Variant report

Variant	rs17395659
Chromosome Location	chr3:100014606-100014607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100004605..100006310-chr3:100013598..100015816,2	MCF-7	breast:
2	chr3:100006936..100011076-chr3:100013450..100017169,4	K562	blood:
3	chr3:100012557..100015555-chr3:100016253..100017755,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv869690	chr3:99984442-100054949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99980600-100037200	Weak transcription	Spleen	Spleen
2	chr3:99980600-100053200	Weak transcription	Gastric	stomach
3	chr3:99981200-100030800	Weak transcription	Fetal Heart	heart
4	chr3:99986600-100024800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:99989000-100025000	Weak transcription	Fetal Brain Female	brain
6	chr3:99990600-100030600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:99990800-100021400	Weak transcription	Psoas Muscle	Psoas
8	chr3:99992400-100017600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:99994400-100040800	Weak transcription	Esophagus	oesophagus
10	chr3:99995400-100019000	Weak transcription	Colonic Mucosa	Colon
11	chr3:99996000-100052800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:99996000-100053000	Weak transcription	Small Intestine	intestine
13	chr3:99996400-100025600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:99996800-100016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:99997200-100017800	Weak transcription	Brain Angular Gyrus	brain
16	chr3:99997600-100017000	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:99997800-100031800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr3:99998200-100016200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:99998400-100028000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:99998600-100015400	Strong transcription	Osteobl	bone
21	chr3:99998600-100026400	Strong transcription	HSMM	muscle
22	chr3:99998600-100033800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:99998800-100019800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:99998800-100021800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr3:99998800-100026600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:100000800-100015800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:100002400-100018400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:100003400-100015000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:100005200-100021600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:100005800-100015000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:100006000-100018000	Weak transcription	Ovary	ovary
32	chr3:100006000-100019800	Weak transcription	Hela-S3	cervix
33	chr3:100006800-100016400	Weak transcription	NHEK	skin
34	chr3:100007000-100018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:100007000-100045000	Weak transcription	Lung	lung
36	chr3:100007800-100035800	Weak transcription	A549	lung
37	chr3:100008000-100015800	Strong transcription	NHDF-Ad	bronchial
38	chr3:100008000-100019600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:100008200-100015400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:100008200-100022200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:100008400-100022600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr3:100008400-100026800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:100008600-100053000	Weak transcription	Aorta	Aorta
44	chr3:100008800-100016600	Strong transcription	NH-A	brain
45	chr3:100009000-100016600	Strong transcription	Adipose Nuclei	Adipose
46	chr3:100009000-100025400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:100009200-100015000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr3:100009200-100045000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr3:100009400-100022600	Weak transcription	HSMMtube	muscle
50	chr3:100009400-100031800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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