Variant report

Variant	rs17396793
Chromosome Location	chr2:48365018-48365019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:48360848..48365777-chr2:48371665..48375027,6	K562	blood:
2	chr2:48352173..48354982-chr2:48364951..48367496,2	K562	blood:
3	chr2:48363776..48365843-chr2:48541548..48543091,2	K562	blood:

Variant related genes	Relation type
ENSG00000170802	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10495950	0.93[EUR][1000 genomes]
rs11674475	0.96[EUR][1000 genomes]
rs11676381	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11677205	0.80[CEU][hapmap]
rs11677590	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11679956	0.96[EUR][1000 genomes]
rs11680162	0.92[EUR][1000 genomes]
rs11680404	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11680657	0.88[EUR][1000 genomes]
rs11681876	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11683689	0.93[EUR][1000 genomes]
rs11687461	0.83[CEU][hapmap]
rs11687670	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11687989	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11689736	0.96[EUR][1000 genomes]
rs11689818	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11691493	0.96[EUR][1000 genomes]
rs11692660	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs11693267	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11695799	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11695923	0.88[EUR][1000 genomes]
rs11889493	0.99[EUR][1000 genomes]
rs13431982	0.93[EUR][1000 genomes]
rs1586126	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17037087	0.84[EUR][1000 genomes]
rs17324473	0.86[EUR][1000 genomes]
rs17324965	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs17325048	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17325209	0.89[EUR][1000 genomes]
rs17397094	0.88[EUR][1000 genomes]
rs2014675	0.88[EUR][1000 genomes]
rs2840147	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34135365	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4530419	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs55802119	0.93[EUR][1000 genomes]
rs56037709	0.89[EUR][1000 genomes]
rs58032869	0.94[EUR][1000 genomes]
rs58136909	0.93[EUR][1000 genomes]
rs6730166	0.98[EUR][1000 genomes]
rs6733558	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6745620	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs6747738	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs6759056	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73927905	0.81[EUR][1000 genomes]
rs73927910	0.83[EUR][1000 genomes]
rs73927911	0.84[EUR][1000 genomes]
rs73927919	0.86[EUR][1000 genomes]
rs7561696	0.91[EUR][1000 genomes]
rs7571905	0.91[EUR][1000 genomes]
rs7581510	0.95[EUR][1000 genomes]
rs7583719	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs952468	0.91[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009769	chr2:47972642-48509765	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv535680	chr2:47972642-48509765	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv530831	chr2:48059709-48632317	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv519831	chr2:48072855-48566031	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1003766	chr2:48102244-48559654	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv581773	chr2:48277490-48443109	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48358600-48371800	Weak transcription	Psoas Muscle	Psoas
2	chr2:48363200-48365600	Weak transcription	K562	blood
3	chr2:48364400-48366400	Enhancers	Primary neutrophils fromperipheralblood	blood

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