Variant report

Variant	rs17399879
Chromosome Location	chr10:5332298-5332299
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5327837..5330329-chr10:5330922..5333846,2	K562	blood:
2	chr10:5325782..5327303-chr10:5331354..5334117,2	K562	blood:

Variant related genes	Relation type
ENSG00000215267	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12415284	1.00[CEU][hapmap]
rs17134750	0.83[EUR][1000 genomes]
rs17307359	1.00[CHB][hapmap]
rs17396032	1.00[CHB][hapmap]
rs4609510	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4881430	0.83[EUR][1000 genomes]
rs61729619	1.00[ASN][1000 genomes]
rs7097295	1.00[CHB][hapmap]
rs72778450	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72778452	0.91[EUR][1000 genomes]
rs72778453	0.90[EUR][1000 genomes]
rs72778460	0.83[EUR][1000 genomes]
rs7475343	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1039386	chr10:5008383-5348491	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv466715	chr10:5285597-5348491	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv466717	chr10:5285597-5348491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv549888	chr10:5285597-5348491	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv894795	chr10:5286600-5348491	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv894796	chr10:5300976-5348491	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5326000-5333600	Weak transcription	Esophagus	oesophagus
2	chr10:5326000-5336000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:5326600-5332400	Weak transcription	NHDF-Ad	bronchial
4	chr10:5326600-5333000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:5326600-5333400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:5326600-5334200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:5326600-5337200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:5327200-5332800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:5327400-5332400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:5327400-5332400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:5327400-5332800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:5328000-5333200	Weak transcription	HUVEC	blood vessel
13	chr10:5328000-5333400	Weak transcription	Placenta	Placenta
14	chr10:5331000-5333200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:5331200-5332400	Weak transcription	Dnd41	blood
16	chr10:5331600-5332600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:5331600-5333200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:5331600-5333200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:5331800-5333000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:5331800-5333400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:5331800-5333400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:5332000-5332400	Weak transcription	A549	lung
23	chr10:5332000-5333400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:5332200-5332600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr10:5332200-5333200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:5332200-5333400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:5332200-5333400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:5332200-5334000	Enhancers	Primary monocytes fromperipheralblood	blood

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