Variant report

Variant	rs1740892
Chromosome Location	chr1:70137112-70137113
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489554	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11209514	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11209516	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11209517	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11209518	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12022970	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12025135	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12025862	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12035984	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12118129	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12121402	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12128962	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12133092	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12729671	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1418006	0.87[ASN][1000 genomes]
rs17325181	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34170212	0.94[EUR][1000 genomes]
rs4462090	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650304	0.96[ASN][1000 genomes]
rs4650306	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58546454	0.84[ASN][1000 genomes]
rs61782215	0.81[ASN][1000 genomes]
rs61782255	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6680513	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72673029	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7528414	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7537453	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2764189	chr1:70111889-70137513	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70135200-70137200	Weak transcription	NH-A	brain
2	chr1:70136000-70137600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:70136200-70137200	Enhancers	Fetal Brain Male	brain
4	chr1:70136600-70137400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:70136600-70139200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:70136800-70137400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:70136800-70137600	Enhancers	Brain Angular Gyrus	brain
8	chr1:70136800-70137600	Enhancers	Right Atrium	heart
9	chr1:70136800-70137800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:70136800-70138600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:70137000-70137200	Enhancers	Brain Anterior Caudate	brain
12	chr1:70137000-70137400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:70137000-70137400	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr1:70137000-70137400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:70137000-70137400	Enhancers	Fetal Brain Female	brain
16	chr1:70137000-70137800	Enhancers	Brain Cingulate Gyrus	brain

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