Variant report

Variant	rs17414017
Chromosome Location	chr5:8788937-8788938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10035283	1.00[EUR][1000 genomes]
rs10036835	1.00[EUR][1000 genomes]
rs10037623	1.00[EUR][1000 genomes]
rs10042817	1.00[EUR][1000 genomes]
rs10042965	1.00[EUR][1000 genomes]
rs10056666	1.00[EUR][1000 genomes]
rs10057659	1.00[EUR][1000 genomes]
rs10060957	1.00[EUR][1000 genomes]
rs10071717	1.00[EUR][1000 genomes]
rs10078254	1.00[EUR][1000 genomes]
rs13355545	1.00[EUR][1000 genomes]
rs13360155	1.00[EUR][1000 genomes]
rs16881312	1.00[EUR][1000 genomes]
rs16881410	1.00[EUR][1000 genomes]
rs16881411	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28594528	1.00[EUR][1000 genomes]
rs28716559	1.00[EUR][1000 genomes]
rs28772988	1.00[EUR][1000 genomes]
rs57169216	1.00[EUR][1000 genomes]
rs6882376	1.00[EUR][1000 genomes]
rs6891810	1.00[EUR][1000 genomes]
rs6892140	1.00[EUR][1000 genomes]
rs73035694	1.00[EUR][1000 genomes]
rs7703531	1.00[EUR][1000 genomes]
rs7704778	1.00[EUR][1000 genomes]
rs7710497	1.00[YRI][hapmap]
rs7710498	1.00[EUR][1000 genomes]
rs7724235	1.00[YRI][hapmap]
rs7730623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757103	chr5:8701920-8790546	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2759321	chr5:8701920-8790546	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv597053	chr5:8703148-8789479	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv881438	chr5:8728874-9695667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	esv3492014	chr5:8749469-9004066	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3492015	chr5:8749469-9004066	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv461944	chr5:8758041-9209831	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
8	nsv597069	chr5:8758041-9209831	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8787800-8789000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:8788000-8789000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:8788600-8789000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr5:8788800-8789000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links