Variant report

Variant	rs17418899
Chromosome Location	chr1:56120773-56120774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1499676	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17416739	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs17451237	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17451835	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2649629	0.85[CHB][hapmap]
rs61776362	0.82[AMR][1000 genomes]
rs61776363	0.82[AMR][1000 genomes]
rs61776364	0.82[AMR][1000 genomes]
rs61776373	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61776380	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61776381	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61776384	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56117800-56122800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56118600-56123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:56118800-56123800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:56119200-56123600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56120400-56121200	Enhancers	Fetal Muscle Leg	muscle
6	chr1:56120600-56121200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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