Variant report

Variant	rs17426266
Chromosome Location	chr15:76124599-76124600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76109437..76111890-chr15:76122951..76125428,2	K562	blood:
2	chr15:76124548..76127372-chr15:76195423..76198087,2	MCF-7	breast:
3	chr15:76119075..76126394-chr15:76131883..76137214,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000140367	Chromatin interaction
ENSG00000252372	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11630022	0.92[EUR][1000 genomes]
rs11632533	0.90[EUR][1000 genomes]
rs1568084	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes]
rs1809038	0.91[EUR][1000 genomes]
rs1829130	0.91[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes]
rs2405777	0.91[EUR][1000 genomes]
rs2604410	0.89[EUR][1000 genomes]
rs2655128	0.92[EUR][1000 genomes]
rs2655129	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[EUR][1000 genomes]
rs2897232	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76121200-76128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:76122800-76125200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:76123000-76124600	Enhancers	HSMMtube	muscle
4	chr15:76123000-76124800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr15:76123000-76124800	Flanking Active TSS	K562	blood
6	chr15:76123200-76124600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:76123200-76124600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr15:76123200-76124800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:76123200-76124800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:76123200-76125000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:76123400-76124600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:76123400-76124800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr15:76123400-76124800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:76123400-76124800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr15:76123600-76124600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:76123600-76124800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:76123600-76124800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:76123600-76125000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:76123800-76124600	Enhancers	HepG2	liver
20	chr15:76124000-76124600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:76124000-76125000	Enhancers	HMEC	breast
22	chr15:76124000-76128400	Weak transcription	HSMM	muscle
23	chr15:76124200-76124800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:76124200-76129400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:76124400-76125000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:76124400-76125000	Enhancers	NHEK	skin
27	chr15:76124400-76126200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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