Variant report

Variant	rs17426594
Chromosome Location	chr7:26960847-26960848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17375390	1.00[ASN][1000 genomes]
rs17427421	1.00[ASN][1000 genomes]
rs17501111	1.00[ASN][1000 genomes]
rs28357135	1.00[ASN][1000 genomes]
rs4722669	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26956000-26961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:26957000-26962200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:26957400-26962400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:26960400-26961400	Weak transcription	HMEC	breast
5	chr7:26960400-26969600	Weak transcription	NHEK	skin
6	chr7:26960800-26963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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