Variant report

Variant	rs17427260
Chromosome Location	chr7:27086535-27086536
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:27086119-27086830	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr7:27086205-27086809	MCF10A-Er-Src	breast:	n/a	n/a
3	SMC3	chr7:27086496-27086842	Hela-S3	cervix:	n/a	n/a
4	SP1	chr7:27086378-27086883	A549	lung:	n/a	n/a
5	STAT3	chr7:27086521-27086855	MCF10A-Er-Src	breast:	n/a	n/a
6	SP1	chr7:27086384-27086975	HCT-116	colon:	n/a	n/a
7	MAFK	chr7:27086516-27087036	IMR90	lung:	n/a	n/a
8	FOS	chr7:27086133-27087114	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr7:27086438-27086956	HCT-116	colon:	n/a	n/a
10	MAFK	chr7:27086494-27086864	Hela-S3	cervix:	n/a	n/a
11	JUND	chr7:27086336-27086955	HCT-116	colon:	n/a	n/a
12	EP300	chr7:27086393-27086972	Hela-S3	cervix:	n/a	n/a
13	STAT3	chr7:27086482-27086830	MCF10A-Er-Src	breast:	n/a	n/a
14	MYC	chr7:27086353-27086827	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr7:27086406-27086830	MCF10A-Er-Src	breast:	n/a	n/a
16	FOSL2	chr7:27086520-27086745	A549	lung:	n/a	n/a
17	JUND	chr7:27086344-27086973	HCT-116	colon:	n/a	n/a
18	JUN	chr7:27086476-27086815	HUVEC	blood vessel:	n/a	n/a
19	E2F4	chr7:27086501-27086812	MCF10A-Er-Src	breast:	n/a	n/a
20	FOSL2	chr7:27086383-27086852	A549	lung:	n/a	n/a
21	FOS	chr7:27086117-27086846	MCF10A-Er-Src	breast:	n/a	n/a
22	FOSL1	chr7:27086320-27086830	HCT-116	colon:	n/a	n/a
23	FOSL1	chr7:27086238-27086975	HCT-116	colon:	n/a	n/a
24	SP1	chr7:27086321-27086970	HCT-116	colon:	n/a	n/a
25	CEBPB	chr7:27086355-27087055	HCT-116	colon:	n/a	n/a
26	POLR2A	chr7:27086412-27086801	HUVEC	blood vessel:	n/a	n/a
27	MAX	chr7:27086344-27086828	A549	lung:	n/a	n/a
28	FOS	chr7:27086170-27087128	MCF10A-Er-Src	breast:	n/a	n/a
29	FOS	chr7:27086451-27087216	HUVEC	blood vessel:	n/a	n/a
30	CEBPB	chr7:27086513-27087114	Hela-S3	cervix:	n/a	n/a
31	STAT3	chr7:27086476-27086834	MCF10A-Er-Src	breast:	n/a	n/a
32	POLR2A	chr7:27086452-27086826	U87	brain:	n/a	n/a
33	GATA3	chr7:27086330-27086974	A549	lung:	n/a	chr7:27086385-27086395
34	POLR2A	chr7:27086493-27086826	U87	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	7:27082525-27089724..7:27130634-27137201	Hela-S3	cervix:
2	7:27082525-27089724..7:27165488-27167947	Hela-S3	cervix:
3	7:27082525-27089724..7:27176959-27181770	Hela-S3	cervix:
4	7:27082525-27089724..7:27181770-27195105	Hela-S3	cervix:

No data

Variant related genes	Relation type
NHP2P2	TF binding region
ENSG00000254369	Chromatin interaction
ENSG00000233429	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000105991	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000106006	Chromatin interaction
ENSG00000272801	Chromatin interaction
ENSG00000273433	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17436556	1.00[JPT][hapmap]
rs17501139	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27086000-27087400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:27086200-27086600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:27086200-27086600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:27086200-27086600	Enhancers	Osteobl	bone
5	chr7:27086200-27086800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:27086200-27086800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:27086200-27086800	Enhancers	NHDF-Ad	bronchial
8	chr7:27086200-27087200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:27086200-27087200	Enhancers	NHEK	skin
10	chr7:27086200-27087400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:27086200-27087400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:27086200-27087400	Enhancers	Hela-S3	cervix
13	chr7:27086200-27088200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:27086400-27086600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr7:27086400-27086600	Flanking Active TSS	A549	lung
16	chr7:27086400-27086600	Enhancers	HMEC	breast
17	chr7:27086400-27087000	Flanking Active TSS	HUVEC	blood vessel

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