Variant report

Variant rs17427616
Chromosome Location chr7:27160526-27160527
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27145800-27162800 Strong transcription Primary hematopoietic stem cells short term culture blood
2 chr7:27146400-27169600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr7:27152800-27169400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr7:27155200-27163600 Weak transcription NHDF-Ad bronchial
5 chr7:27155400-27161600 Weak transcription Muscle Satellite Cultured Cells --
6 chr7:27155600-27169400 Weak transcription Hela-S3 cervix
7 chr7:27156200-27161600 Weak transcription Gastric stomach
8 chr7:27156200-27169200 Weak transcription Osteobl bone
9 chr7:27156600-27161600 Weak transcription NHEK skin
10 chr7:27157400-27160600 Enhancers Sigmoid Colon Sigmoid Colon
11 chr7:27158000-27161000 Enhancers Rectal Mucosa Donor 31 rectum
12 chr7:27158200-27161000 Enhancers Small Intestine intestine
13 chr7:27158400-27160600 Weak transcription Aorta Aorta
14 chr7:27158400-27161200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr7:27158400-27161400 Enhancers Colon Smooth Muscle Colon
16 chr7:27158400-27161400 Enhancers Fetal Adrenal Gland Adrenal Gland
17 chr7:27158400-27161600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr7:27158400-27161600 Weak transcription Esophagus oesophagus
19 chr7:27158400-27161800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr7:27158600-27160600 Genic enhancers Fetal Intestine Small intestine
21 chr7:27158600-27161200 Enhancers Rectal Mucosa Donor 29 rectum
22 chr7:27158600-27161800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr7:27158600-27161800 Weak transcription Lung lung
24 chr7:27159000-27161000 Enhancers Psoas Muscle Psoas
25 chr7:27159200-27161000 Flanking Active TSS Stomach Smooth Muscle stomach
26 chr7:27159200-27161600 Enhancers Stomach Mucosa stomach
27 chr7:27159400-27160600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr7:27159400-27161200 Weak transcription Primary hematopoietic stem cells blood
29 chr7:27159400-27161200 Enhancers Skeletal Muscle Male skeletal muscle
30 chr7:27159400-27161200 Enhancers Skeletal Muscle Female skeletal muscle
31 chr7:27159400-27163400 Weak transcription Spleen Spleen
32 chr7:27159600-27161200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr7:27159800-27161000 Enhancers Fetal Muscle Leg muscle
34 chr7:27159800-27162000 Genic enhancers Fetal Muscle Trunk muscle
35 chr7:27159800-27162800 Active TSS Breast Myoepithelial Primary Cells Breast
36 chr7:27160200-27160600 Active TSS Fetal Lung lung
37 chr7:27160200-27160800 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr7:27160200-27160800 Enhancers HSMMtube muscle
39 chr7:27160200-27161000 Enhancers HMEC breast
40 chr7:27160200-27161200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr7:27160200-27161200 Bivalent Enhancer NH-A brain
42 chr7:27160200-27161400 Enhancers Adipose Nuclei Adipose
43 chr7:27160200-27161400 Flanking Active TSS A549 lung
44 chr7:27160200-27161600 Enhancers Colonic Mucosa Colon
45 chr7:27160200-27162000 Enhancers Liver Liver
46 chr7:27160200-27163200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr7:27160200-27163800 Flanking Active TSS HUVEC blood vessel
48 chr7:27160400-27160600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
49 chr7:27160400-27160600 Active TSS Rectal Smooth Muscle rectum
50 chr7:27160400-27160600 Active TSS HepG2 liver

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