Variant report

Variant	rs17429217
Chromosome Location	chr12:117295333-117295334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117265724..117267290-chr12:117293173..117295479,2	K562	blood:
2	chr12:117294791..117296397-chr12:117298247..117300545,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HRK-2	chr12:117293950-117295968	NONHSAT030969

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10850711	1.00[CEU][hapmap]
rs60271353	1.00[AMR][1000 genomes]
rs7131700	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7134617	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7305537	1.00[YRI][hapmap]
rs7316426	1.00[YRI][hapmap]
rs7316436	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Alzheimer's disease (age of onset)	22005931	GWAS catalog

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
2	chr12:117273800-117296800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:117276000-117296000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:117276800-117296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:117287600-117296200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:117290200-117296000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:117290200-117296200	Weak transcription	Fetal Brain Female	brain
9	chr12:117290600-117296000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:117290600-117296000	Weak transcription	Brain Germinal Matrix	brain
11	chr12:117290600-117296000	Weak transcription	Fetal Brain Male	brain
12	chr12:117292400-117297800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:117293400-117295400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr12:117293800-117295600	Weak transcription	Fetal Thymus	thymus
15	chr12:117294000-117297400	Weak transcription	HSMMtube	muscle
16	chr12:117294000-117300000	Enhancers	Primary B cells from peripheral blood	blood
17	chr12:117294600-117296600	Enhancers	Primary B cells from cord blood	blood
18	chr12:117294600-117297800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr12:117294600-117298600	Weak transcription	Thymus	Thymus
20	chr12:117294600-117302000	Weak transcription	Hela-S3	cervix
21	chr12:117294800-117302400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:117295000-117296000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr12:117295000-117296400	Enhancers	GM12878-XiMat	blood
24	chr12:117295000-117297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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