Variant report

Variant	rs17429745
Chromosome Location	chr4:106038169-106038170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106038096..106038703-chr4:106047332..106048128,3	MCF-7	breast:
2	chr4:105982559..105986858-chr4:106036992..106040333,4	MCF-7	breast:
3	chr4:105828837..105829590-chr4:106037810..106038707,3	MCF-7	breast:
4	chr4:105828920..105829479-chr4:106037902..106038659,2	MCF-7	breast:
5	chr4:105817547..105818481-chr4:106037893..106038686,3	MCF-7	breast:
6	chr4:106037748..106040803-chr4:106047611..106051482,3	MCF-7	breast:
7	chr4:105817615..105818411-chr4:106037880..106038625,2	MCF-7	breast:
8	chr4:106038096..106038648-chr4:106047611..106048128,2	MCF-7	breast:
9	chr4:105817598..105818510-chr4:106037773..106038780,3	MCF-7	breast:
10	chr4:106038156..106038663-chr4:106047270..106047870,3	MCF-7	breast:
11	chr4:106037781..106038629-chr4:106047332..106048153,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12509636	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17429675	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17429682	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17501550	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2214409	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56883672	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62331120	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62331124	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72617743	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106032600-106038400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:106036200-106041600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106036400-106041600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:106036800-106041600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:106037400-106038200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr4:106037800-106038400	Enhancers	Primary B cells from cord blood	blood
7	chr4:106037800-106041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:106038000-106038400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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