Variant report
| Variant | rs17430711 |
|---|---|
| Chromosome Location | chr4:106445861-106445862 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:106445140..106446660-chr4:106447275..106449907,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000216425 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs11934459 | 0.87[EUR][1000 genomes] |
| rs17257179 | 0.87[EUR][1000 genomes] |
| rs17323257 | 0.87[EUR][1000 genomes] |
| rs28546478 | 0.87[EUR][1000 genomes] |
| rs28712035 | 0.87[EUR][1000 genomes] |
| rs56261623 | 0.87[EUR][1000 genomes] |
| rs72954338 | 0.87[EUR][1000 genomes] |
| rs7655876 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879699 | chr4:106212562-106698892 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv521423 | chr4:106442518-106448900 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
