Variant report

Variant	rs17431420
Chromosome Location	chr3:146272269-146272270
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10513282	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146268800-146272400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:146269200-146273200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:146270000-146284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:146270200-146274200	Weak transcription	HMEC	breast
5	chr3:146271200-146272600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:146271400-146272400	Enhancers	Dnd41	blood
7	chr3:146271600-146272400	Active TSS	Primary B cells from cord blood	blood
8	chr3:146271600-146272600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr3:146271600-146272600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:146271800-146272600	Enhancers	K562	blood
11	chr3:146271800-146272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:146272000-146272400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:146272000-146272400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:146272000-146272600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:146272200-146272600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:146272200-146272600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:146272200-146275600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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