Variant report

Variant	rs17431425
Chromosome Location	chr5:115766683-115766684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115763956..115765472-chr5:115766076..115768967,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17431689	0.95[CHD][hapmap];1.00[MEX][hapmap]
rs17509298	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59686568	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6861280	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4969	chr5:115753919-115767853	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
5	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
9	chr5:115756600-115768800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:115757200-115782000	Weak transcription	Gastric	stomach
12	chr5:115757400-115767200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
14	chr5:115758000-115769200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:115758800-115768400	Weak transcription	Primary B cells from cord blood	blood
16	chr5:115759000-115773600	Weak transcription	Fetal Kidney	kidney
17	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr5:115761600-115773400	Weak transcription	Liver	Liver
20	chr5:115761600-115773400	Weak transcription	HepG2	liver
21	chr5:115762600-115771800	Weak transcription	Left Ventricle	heart
22	chr5:115764400-115768400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr5:115765000-115767200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:115765600-115767000	Enhancers	Lung	lung
25	chr5:115765800-115771800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:115766000-115772400	Weak transcription	Brain Substantia Nigra	brain
27	chr5:115766600-115767800	Enhancers	Brain Hippocampus Middle	brain
28	chr5:115766600-115768800	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links