Variant report

Variant	rs17433092
Chromosome Location	chr4:96226609-96226610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96221540..96223256-chr4:96225033..96227076,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13133222	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17437749	1.00[YRI][hapmap]
rs1994175	1.00[MKK][hapmap]
rs34023736	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71601270	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17433092	TSPAN5	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96220400-96238800	Weak transcription	Aorta	Aorta
2	chr4:96223000-96252400	Weak transcription	Fetal Lung	lung
3	chr4:96224000-96227000	Enhancers	Brain Anterior Caudate	brain
4	chr4:96224400-96227000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:96225000-96227000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:96225000-96227000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:96225000-96227400	Enhancers	Brain Substantia Nigra	brain
8	chr4:96225000-96229400	Enhancers	Brain Hippocampus Middle	brain
9	chr4:96225200-96226800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:96225200-96226800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:96225200-96227000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:96225200-96227000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:96225200-96227000	Enhancers	HSMMtube	muscle
14	chr4:96225200-96227200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:96225200-96227200	Enhancers	HSMM	muscle
16	chr4:96225400-96227000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr4:96225600-96226800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:96225600-96227000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:96225800-96226800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:96226000-96226800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:96226000-96227000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:96226000-96227000	Enhancers	HMEC	breast
23	chr4:96226200-96226800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:96226400-96226800	Flanking Active TSS	A549	lung
25	chr4:96226400-96227400	Enhancers	Brain Cingulate Gyrus	brain
26	chr4:96226600-96227000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:96226600-96236800	Weak transcription	Brain Angular Gyrus	brain

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