Variant report

Variant	rs17434388
Chromosome Location	chr7:39974094-39974095
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39971961..39975837-chr7:39987778..39990826,3	MCF-7	breast:
2	chr7:39972038..39974113-chr7:39987608..39989357,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065883	Chromatin interaction
ENSG00000259826	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10046564	1.00[CHB][hapmap]
rs10225492	0.81[EUR][1000 genomes]
rs10228596	1.00[CHB][hapmap]
rs10235989	0.81[EUR][1000 genomes]
rs10239324	0.82[EUR][1000 genomes]
rs10272514	0.80[EUR][1000 genomes]
rs10277422	1.00[CHB][hapmap]
rs10279016	0.81[EUR][1000 genomes]
rs1082023	0.80[EUR][1000 genomes]
rs12701787	0.82[EUR][1000 genomes]
rs13239106	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs13241453	0.81[EUR][1000 genomes]
rs13310449	1.00[CHB][hapmap]
rs17435812	0.81[EUR][1000 genomes]
rs17496226	0.82[EUR][1000 genomes]
rs17496247	0.82[EUR][1000 genomes]
rs17526699	0.80[EUR][1000 genomes]
rs2140254	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2329611	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs28492942	0.82[EUR][1000 genomes]
rs28547436	0.82[EUR][1000 genomes]
rs34326687	0.82[EUR][1000 genomes]
rs34470312	0.82[EUR][1000 genomes]
rs34748607	0.82[EUR][1000 genomes]
rs35226291	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35618050	0.82[EUR][1000 genomes]
rs4428576	0.81[EUR][1000 genomes]
rs4469365	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4481477	0.80[EUR][1000 genomes]
rs4498451	0.82[EUR][1000 genomes]
rs6947071	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73127832	0.82[EUR][1000 genomes]
rs773382	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs7794792	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7811585	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs878785	0.81[EUR][1000 genomes]
rs9655036	1.00[CHB][hapmap]
rs9655407	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs9986996	0.82[EUR][1000 genomes]
rs9986997	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv887976	chr7:39874986-40018693	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv887977	chr7:39885541-40018693	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39973600-39974200	Enhancers	Liver	Liver

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