Variant report

Variant	rs17435959
Chromosome Location	chr11:102651313-102651314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:102651262-102651623	MCF10A-Er-Src	breast:	n/a	n/a
2	CTCF	chr11:102651280-102651430	HAc	cerebellar:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
3	JUND	chr11:102651279-102651519	HepG2	liver:	n/a	chr11:102651417-102651428
4	CTCF	chr11:102651195-102651485	H1-hESC	embryonic stem cell:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
5	TCF12	chr11:102651053-102651825	SK-N-SH	brain:	n/a	n/a
6	TEAD4	chr11:102651078-102651442	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr11:102651280-102651430	HepG2	liver:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
8	CTCF	chr11:102651276-102651482	GM12878	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
9	CTCF	chr11:102651180-102651330	A549	lung:	n/a	n/a
10	CTCF	chr11:102651280-102651430	GM12868	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
11	CTCF	chr11:102651260-102651410	GM12871	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
12	CTCF	chr11:102651240-102651390	SAEC	small airway:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
13	POLR2A	chr11:102651105-102651707	HUVEC	blood vessel:	n/a	n/a
14	CTCF	chr11:102651280-102651430	SK-N-SH_RA	brain:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
15	CTCF	chr11:102651280-102651430	HCPEpiC	choroid plexus:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
16	CTCF	chr11:102651272-102651474	HepG2	liver:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
17	CTCF	chr11:102651139-102651469	A549	lung:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
18	TEAD4	chr11:102651133-102651523	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr11:102651300-102651450	HCFaa	heart:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
20	CTCF	chr11:102651280-102651430	WERI-Rb-1	eye:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
21	CTCF	chr11:102651232-102651358	GM19238	blood:	n/a	n/a
22	CTCF	chr11:102651280-102651430	HFF	foreskin:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
23	CTCF	chr11:102651260-102651410	HEEpiC	esophagus:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
24	CTCF	chr11:102651300-102651450	HVMF	connective:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
25	ATF2	chr11:102651157-102651542	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr11:102651280-102651430	AG10803	skin:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
27	CTCF	chr11:102651300-102651450	HCT-116	colon:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
28	CTCF	chr11:102651253-102651461	MCF-7	breast:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
29	CTCF	chr11:102651300-102651450	BE2_C	brain:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
30	FOS	chr11:102651198-102651698	HUVEC	blood vessel:	n/a	n/a
31	FOS	chr11:102651180-102651671	MCF10A-Er-Src	breast:	n/a	n/a
32	RAD21	chr11:102651131-102651607	A549	lung:	n/a	chr11:102651360-102651379
33	CTCF	chr11:102651313-102651462	K562	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
34	CTCF	chr11:102651300-102651450	NHLF	lung:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
35	CTCF	chr11:102651280-102651430	HCM	heart:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
36	CTCF	chr11:102651280-102651430	GM12865	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
37	CTCF	chr11:102651260-102651410	WERI-Rb-1	eye:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
38	CTCF	chr11:102651280-102651430	AG04449	skin:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
39	FOSL2	chr11:102651148-102651722	SK-N-SH	brain:	n/a	n/a
40	CTCF	chr11:102651258-102651433	MCF-7	breast:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
41	FOXA1	chr11:102651200-102651433	T-47D	breast:	n/a	n/a
42	CTCF	chr11:102651302-102651431	GM10266	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
43	CTCF	chr11:102651280-102651430	GM12872	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
44	PBX3	chr11:102651110-102651704	SK-N-SH	brain:	n/a	n/a
45	CTCF	chr11:102651260-102651410	GM12873	blood:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
46	FOS	chr11:102651196-102651697	MCF10A-Er-Src	breast:	n/a	n/a
47	JUN	chr11:102651222-102651555	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr11:102651266-102651346	HUVEC	blood vessel:	n/a	n/a
49	CTCF	chr11:102651260-102651410	HA-sp	spinal cord:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380
50	CTCF	chr11:102651260-102651410	HEK293	kidney:	n/a	chr11:102651357-102651378 chr11:102651368-102651377 chr11:102651362-102651380

Variant related genes	Relation type
WTAPP1	TF binding region

rs_ID	r²[population]
rs17860946	0.89[EUR][1000 genomes]
rs17881127	0.82[EUR][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102647800-102651600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:102650200-102651800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:102650200-102651800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:102650200-102652000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:102650200-102652000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:102650200-102652000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:102650200-102652000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:102650200-102652200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:102650600-102652600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:102650800-102652000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:102650800-102652200	Enhancers	NHEK	skin
12	chr11:102651000-102651400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:102651000-102651400	Enhancers	HMEC	breast
14	chr11:102651000-102651400	Flanking Active TSS	HUVEC	blood vessel
15	chr11:102651000-102651600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:102651000-102651800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:102651000-102651800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:102651000-102652000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:102651000-102652000	Enhancers	Hela-S3	cervix
20	chr11:102651000-102652200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:102651000-102652800	Enhancers	Stomach Mucosa	stomach
22	chr11:102651200-102651400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:102651200-102651400	Enhancers	Gastric	stomach
24	chr11:102651200-102651600	Flanking Active TSS	NH-A	brain
25	chr11:102651200-102651600	Enhancers	NHDF-Ad	bronchial
26	chr11:102651200-102651800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links