Variant report

Variant	rs17437895
Chromosome Location	chr7:78177306-78177307
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17373046	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes]
rs56028221	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57937917	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62468614	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62468615	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62468624	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62468645	1.00[AFR][1000 genomes]
rs62468646	1.00[AFR][1000 genomes]
rs62468648	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78158800-78191000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:78172200-78183000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78173000-78178000	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78173800-78187600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:78176400-78177600	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:78176400-78178600	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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