Variant report
| Variant | rs17437957 |
|---|---|
| Chromosome Location | chr7:27311305-27311306 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr7:27311032-27311372 | HepG2 | liver: | n/a | chr7:27311207-27311218 |
| 2 | CEBPB | chr7:27311075-27311365 | MCF-7 | breast: | n/a | chr7:27311207-27311218 |
| 3 | CEBPB | chr7:27311044-27311407 | A549 | lung: | n/a | chr7:27311207-27311218 |
| 4 | CEBPB | chr7:27311050-27311370 | Hela-S3 | cervix: | n/a | chr7:27311207-27311218 |
| 5 | CEBPB | chr7:27311040-27311402 | K562 | blood: | n/a | chr7:27311207-27311218 |
| 6 | CEBPB | chr7:27310961-27311425 | A549 | lung: | n/a | chr7:27311207-27311218 |
| 7 | CEBPB | chr7:27311094-27311371 | H1-hESC | embryonic stem cell: | n/a | chr7:27311207-27311218 |
| 8 | CEBPB | chr7:27311032-27311357 | IMR90 | lung: | n/a | chr7:27311207-27311218 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:27238414-27242313..7:27310353-27313425 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL35P4 | TF binding region |
| ENSG00000106031 | Chromatin interaction |
| ENSG00000243766 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs17428220 | 1.00[ASN][1000 genomes] |
| rs17428310 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17437838 | 1.00[ASN][1000 genomes] |
| rs17437859 | 1.00[ASN][1000 genomes] |
| rs17437901 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17437978 | 1.00[ASN][1000 genomes] |
| rs58342196 | 1.00[ASN][1000 genomes] |
| rs61129362 | 1.00[ASN][1000 genomes] |
| rs61477479 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020608 | chr7:27139892-27324004 | Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 182 gene(s) | inside rSNPs | diseases |
| 4 | nsv538807 | chr7:27139892-27324004 | Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 182 gene(s) | inside rSNPs | diseases |
| 5 | nsv532118 | chr7:27146920-27354205 | Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 182 gene(s) | inside rSNPs | diseases |
| 6 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
