Variant report

Variant	rs17438614
Chromosome Location	chr7:78194822-78194823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17373046	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56028221	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57937917	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62468614	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62468624	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62468645	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62468646	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62468647	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62468648	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78187000-78198000	Weak transcription	Aorta	Aorta
2	chr7:78191400-78195200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:78191400-78195400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:78192600-78195200	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:78192600-78195400	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78192800-78195200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78193000-78195000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:78193000-78195200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:78193000-78195200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:78193000-78196600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:78193200-78196600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:78193200-78197400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:78193200-78205600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:78193200-78209000	Weak transcription	Psoas Muscle	Psoas
15	chr7:78193400-78195200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:78193600-78195400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:78193600-78195400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:78193600-78195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:78193600-78196000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:78193600-78196200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:78193600-78196800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:78193600-78199400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr7:78194000-78195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:78194000-78196600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links