Variant report

Variant	rs17441179
Chromosome Location	chr12:118870021-118870022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1045542	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069000	1.00[ASN][1000 genomes]
rs12298592	1.00[ASN][1000 genomes]
rs1879405	1.00[ASN][1000 genomes]
rs2062525	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs34789655	1.00[ASN][1000 genomes]
rs55753185	1.00[ASN][1000 genomes]
rs55883924	1.00[ASN][1000 genomes]
rs56345501	1.00[ASN][1000 genomes]
rs73411684	1.00[ASN][1000 genomes]
rs73412971	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053785	chr12:118490955-118874194	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv899547	chr12:118791441-118896304	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17441179	SUDS3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118854000-118870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118854600-118870800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:118854600-118874400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:118854800-118870600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:118854800-118874400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr12:118855200-118874200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:118857000-118874400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:118857400-118870600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:118868000-118870600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr12:118868000-118871000	Weak transcription	Gastric	stomach
11	chr12:118868000-118871000	Weak transcription	Lung	lung
12	chr12:118868800-118870600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:118870000-118871400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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