Variant report

Variant	rs17443234
Chromosome Location	chr12:40589829-40589830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11564198	0.82[CHB][hapmap]
rs17442283	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17443546	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs17444075	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17444549	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17458100	1.00[CHB][hapmap]
rs17458452	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17466009	1.00[CHB][hapmap]
rs17466227	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17466444	1.00[CHB][hapmap]
rs17484093	0.91[CHB][hapmap]
rs17489542	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17490692	1.00[CHB][hapmap]
rs17490928	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17518134	1.00[CHB][hapmap]
rs28365208	1.00[CHB][hapmap]
rs28370664	0.83[CHB][hapmap]
rs28370674	1.00[CHB][hapmap]
rs28370675	1.00[CHB][hapmap]
rs28370828	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40586000-40591000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:40586200-40591600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:40587200-40590400	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:40588000-40590400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:40588600-40590400	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:40589400-40590200	Enhancers	Primary B cells from cord blood	blood
7	chr12:40589600-40592200	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links