Variant report

Variant	rs17448555
Chromosome Location	chr7:26982762-26982763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17448534	1.00[EUR][1000 genomes]
rs17448541	1.00[EUR][1000 genomes]
rs17449143	1.00[EUR][1000 genomes]
rs17464729	1.00[EUR][1000 genomes]
rs17471193	1.00[CHB][hapmap]
rs17471298	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	esv3375882	chr7:26969761-26989047	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26981800-26985400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:26982000-26984800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:26982000-26985200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:26982000-26985200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:26982200-26985400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:26982400-26983600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:26982400-26985200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:26982600-26983200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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