Variant report
Variant | rs17449172 |
---|---|
Chromosome Location | chr3:85528029-85528030 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:85522112..85524399-chr3:85525908..85528436,3 | K562 | blood: | |
2 | chr3:85527157..85529788-chr3:85532322..85535724,4 | K562 | blood: | |
3 | chr3:85516644..85518723-chr3:85527589..85529747,2 | K562 | blood: | |
4 | chr3:85522620..85526472-chr3:85527505..85529886,4 | K562 | blood: | |
5 | chr3:85525792..85532904-chr3:85548163..85554926,11 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10433524 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10433526 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10511079 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs10511086 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11127901 | 1.00[AFR][1000 genomes] |
rs11925844 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs17455956 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs17458714 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs17460464 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17460638 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs17514709 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2067917 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2326314 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2326382 | 1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[AFR][1000 genomes] |
rs4856575 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4856594 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes] |
rs56350211 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs57016540 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs58677682 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6549029 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6776839 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6778895 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6787427 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6787718 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6789209 | 0.81[AFR][1000 genomes] |
rs6794759 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes] |
rs6800177 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs73126392 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73126399 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73128361 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73130310 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs73134750 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes] |
rs73139818 | 1.00[AFR][1000 genomes] |
rs73141528 | 0.81[AFR][1000 genomes] |
rs73141530 | 0.81[AFR][1000 genomes] |
rs73142718 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs73142741 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs73142752 | 0.91[EUR][1000 genomes] |
rs7613660 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7631617 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs7640261 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7642235 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes] |
rs7651291 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs892366 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3419993 | chr3:85030343-85663403 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
2 | esv2753915 | chr3:85071410-85624810 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1002238 | chr3:85357855-85719373 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv536619 | chr3:85357855-85719373 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv590904 | chr3:85438564-85551403 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv590905 | chr3:85438564-85797093 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv998829 | chr3:85449960-85641099 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv536622 | chr3:85449960-85641099 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv526621 | chr3:85470642-85667683 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv1009512 | chr3:85472690-85533487 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
11 | nsv536623 | chr3:85472690-85533487 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
12 | nsv1013601 | chr3:85489536-85570465 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
13 | nsv536624 | chr3:85489536-85570465 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
14 | nsv1009927 | chr3:85497666-85669155 | Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
15 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
16 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
17 | esv2762338 | chr3:85520915-85577233 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
18 | nsv1009804 | chr3:85521984-85581386 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
19 | nsv536626 | chr3:85527837-85578368 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:85519200-85536800 | Weak transcription | Fetal Brain Male | brain |
2 | chr3:85522600-85530600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
3 | chr3:85523600-85530600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
4 | chr3:85525200-85530600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
5 | chr3:85526800-85530600 | Weak transcription | Brain Hippocampus Middle | brain |
6 | chr3:85526800-85530600 | Weak transcription | Psoas Muscle | Psoas |
7 | chr3:85527600-85530400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
8 | chr3:85527800-85530400 | Weak transcription | Brain Substantia Nigra | brain |
9 | chr3:85528000-85530600 | Weak transcription | Osteobl | bone |