Variant report

Variant	rs17449793
Chromosome Location	chr3:156746598-156746599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10513500	0.86[EUR][1000 genomes]
rs10513502	0.83[EUR][1000 genomes]
rs1482850	0.83[EUR][1000 genomes]
rs1482861	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1482862	0.86[EUR][1000 genomes]
rs16826968	0.83[EUR][1000 genomes]
rs17443114	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17450413	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2321456	0.88[EUR][1000 genomes]
rs57791022	0.88[EUR][1000 genomes]
rs59981665	0.88[EUR][1000 genomes]
rs73873771	0.86[EUR][1000 genomes]
rs9289975	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156744200-156747600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156744400-156748000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:156744400-156748000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:156744600-156748000	Weak transcription	NHEK	skin
5	chr3:156746200-156748800	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:156746400-156746800	Enhancers	HUVEC	blood vessel
7	chr3:156746400-156747400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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