Variant report

Variant	rs17451037
Chromosome Location	chr8:118947380-118947381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17451044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4490876	1.00[GIH][hapmap]
rs7842122	0.85[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118935200-118949800	Weak transcription	Psoas Muscle	Psoas
2	chr8:118935200-118958600	Weak transcription	Esophagus	oesophagus
3	chr8:118938000-118949800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:118938800-118947600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:118940600-118949400	Weak transcription	HSMM	muscle
6	chr8:118940800-118949600	Weak transcription	HepG2	liver
7	chr8:118941000-118947800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:118941200-118949200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:118941400-118947600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:118942400-118947400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:118942400-118947600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:118942400-118947800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:118942800-118947600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:118943800-118950800	Enhancers	Liver	Liver
15	chr8:118944200-118948200	Weak transcription	Small Intestine	intestine
16	chr8:118944400-118947800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:118944800-118947400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr8:118944800-118949600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:118945600-118948000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:118945800-118947400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:118945800-118947400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:118945800-118947600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr8:118945800-118948400	Enhancers	Right Atrium	heart
24	chr8:118945800-118948800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:118946000-118947400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr8:118946000-118947400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:118946000-118947400	Enhancers	Primary T cells from cord blood	blood
28	chr8:118946000-118947400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:118946000-118947400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:118946000-118947400	Enhancers	Colon Smooth Muscle	Colon
31	chr8:118946000-118947400	Enhancers	Right Ventricle	heart
32	chr8:118946000-118947400	Enhancers	NHDF-Ad	bronchial
33	chr8:118946000-118947600	Enhancers	Fetal Intestine Small	intestine
34	chr8:118946000-118947800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:118946000-118947800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr8:118946000-118947800	Enhancers	Fetal Intestine Large	intestine
37	chr8:118946000-118948400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:118946000-118948600	Enhancers	Fetal Lung	lung
39	chr8:118946000-118950600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr8:118946200-118947400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr8:118946200-118947400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:118946200-118947400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr8:118946200-118947400	Enhancers	Adipose Nuclei	Adipose
44	chr8:118946200-118947400	Enhancers	Stomach Mucosa	stomach
45	chr8:118946200-118947600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr8:118946200-118947600	Enhancers	Fetal Thymus	thymus
47	chr8:118946200-118947600	Enhancers	NH-A	brain
48	chr8:118946200-118947800	Enhancers	Lung	lung
49	chr8:118946200-118950400	Enhancers	Fetal Heart	heart
50	chr8:118946200-118950600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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