Variant report

Variant	rs17452840
Chromosome Location	chr8:118872622-118872623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv612026	chr8:118871476-118875535	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118860800-118874800	Weak transcription	Lung	lung
2	chr8:118861000-118874200	Weak transcription	A549	lung
3	chr8:118861200-118875000	Weak transcription	Right Ventricle	heart
4	chr8:118861400-118878600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:118861600-118876200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:118861600-118878200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:118863200-118874400	Weak transcription	Stomach Mucosa	stomach
8	chr8:118863200-118879600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:118863400-118873000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:118863400-118874200	Weak transcription	HSMM	muscle
11	chr8:118863400-118874600	Weak transcription	HUVEC	blood vessel
12	chr8:118863400-118874800	Weak transcription	NH-A	brain
13	chr8:118864200-118874800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:118864200-118878600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:118864600-118873000	Weak transcription	Osteobl	bone
16	chr8:118866600-118874600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr8:118870000-118874400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:118870000-118876000	Weak transcription	Fetal Intestine Small	intestine
19	chr8:118870000-118876600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:118870600-118874200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:118871400-118872800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:118871400-118872800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:118871600-118874800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:118871800-118874000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:118872400-118872800	Enhancers	Aorta	Aorta
26	chr8:118872400-118876000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:118872600-118873000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:118872600-118873200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:118872600-118873200	Enhancers	Fetal Muscle Leg	muscle
30	chr8:118872600-118873200	Enhancers	Small Intestine	intestine
31	chr8:118872600-118873200	Enhancers	NHDF-Ad	bronchial
32	chr8:118872600-118873200	Enhancers	NHLF	lung
33	chr8:118872600-118873600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:118872600-118873600	Enhancers	Fetal Stomach	stomach
35	chr8:118872600-118875600	Enhancers	HMEC	breast
36	chr8:118872600-118876000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:118872600-118876400	Enhancers	Colon Smooth Muscle	Colon

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