Variant report

Variant	rs17452876
Chromosome Location	chr1:56122328-56122329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10749702	0.85[CEU][hapmap]
rs11206636	0.85[CEU][hapmap];0.85[MKK][hapmap]
rs12026971	0.85[CEU][hapmap]
rs12132336	0.84[CEU][hapmap]
rs1392128	0.85[MKK][hapmap]
rs1392130	0.85[CEU][hapmap];0.85[MKK][hapmap]
rs1392132	0.85[CEU][hapmap]
rs7513395	0.80[CEU][hapmap]
rs7546899	0.84[CEU][hapmap]
rs7555929	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56117800-56122800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56118600-56123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:56118800-56123800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:56119200-56123600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56121200-56123800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56121800-56123600	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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