Variant report

Variant	rs17454120
Chromosome Location	chr8:119084018-119084019
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11562721	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17431728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17431748	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17431757	1.00[CHB][hapmap]
rs17451050	1.00[CHB][hapmap]
rs1870100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6992023	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73327853	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7843725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119062800-119085000	Weak transcription	Fetal Stomach	stomach
2	chr8:119068000-119085600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:119069200-119091600	Weak transcription	Primary T cells from cord blood	blood
4	chr8:119074000-119086200	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:119074000-119087200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:119074800-119086400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:119074800-119088600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:119075000-119102000	Weak transcription	Spleen	Spleen
9	chr8:119075600-119086000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:119075800-119085800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:119075800-119086200	Weak transcription	Right Atrium	heart
12	chr8:119075800-119086400	Weak transcription	Brain Anterior Caudate	brain
13	chr8:119076000-119086200	Weak transcription	Right Ventricle	heart
14	chr8:119076400-119086200	Weak transcription	Left Ventricle	heart
15	chr8:119076400-119086200	Weak transcription	Lung	lung
16	chr8:119078000-119099000	Weak transcription	Dnd41	blood
17	chr8:119078200-119085200	Weak transcription	Fetal Brain Male	brain
18	chr8:119078400-119085800	Weak transcription	Fetal Heart	heart
19	chr8:119078400-119086600	Weak transcription	Pancreas	Pancrea
20	chr8:119078400-119088400	Weak transcription	Hela-S3	cervix
21	chr8:119078400-119091600	Weak transcription	Gastric	stomach
22	chr8:119079200-119086200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:119079200-119086400	Weak transcription	Brain Substantia Nigra	brain
24	chr8:119080000-119084800	Genic enhancers	Osteobl	bone
25	chr8:119080200-119086000	Weak transcription	HMEC	breast
26	chr8:119080200-119086200	Weak transcription	Fetal Brain Female	brain
27	chr8:119080600-119086200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:119080800-119085600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:119081200-119084200	Enhancers	Fetal Lung	lung
30	chr8:119081400-119086400	Weak transcription	Esophagus	oesophagus
31	chr8:119081600-119085000	Weak transcription	Adipose Nuclei	Adipose
32	chr8:119081600-119086200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr8:119081600-119087400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:119081800-119086000	Weak transcription	Ovary	ovary
35	chr8:119081800-119086000	Weak transcription	HepG2	liver
36	chr8:119081800-119086200	Weak transcription	Fetal Intestine Large	intestine
37	chr8:119081800-119086400	Weak transcription	Fetal Intestine Small	intestine
38	chr8:119081800-119086400	Weak transcription	Small Intestine	intestine
39	chr8:119081800-119086400	Weak transcription	HUVEC	blood vessel
40	chr8:119082000-119084200	Weak transcription	Aorta	Aorta
41	chr8:119082000-119085400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:119082200-119087000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:119082800-119086000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr8:119083000-119086200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:119083000-119086400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:119083000-119094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:119083200-119086000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:119083200-119086000	Genic enhancers	NHLF	lung
49	chr8:119083400-119084800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:119083400-119085200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links