Variant report

Variant	rs17462783
Chromosome Location	chr4:47643863-47643864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10004038	1.00[CHB][hapmap]
rs10021442	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11932436	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11933764	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943121	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947712	1.00[CHB][hapmap]
rs1316782	1.00[CEU][hapmap]
rs1316783	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13435606	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16860404	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17572227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17572234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17572617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599383	1.00[CHB][hapmap]
rs4694851	1.00[CHB][hapmap]
rs4695239	1.00[CHB][hapmap]
rs4695243	1.00[CHB][hapmap]
rs6447564	1.00[CHB][hapmap]
rs6835978	1.00[CHB][hapmap]
rs6842769	1.00[CHB][hapmap]
rs73238618	1.00[EUR][1000 genomes]
rs73238619	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674353	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1008515	chr4:47488431-47906835	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv948568	chr4:47488431-47907524	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1004939	chr4:47488573-47901460	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv537080	chr4:47488573-47901460	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv997471	chr4:47489412-47895223	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv998892	chr4:47493552-47863354	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv537081	chr4:47493552-47863354	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1000337	chr4:47493907-47902019	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv594118	chr4:47560386-47917730	Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1003341	chr4:47607296-47651992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47618600-47645400	Weak transcription	Right Ventricle	heart
2	chr4:47641600-47645600	Enhancers	NHDF-Ad	bronchial
3	chr4:47641800-47645800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:47642000-47646200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:47642000-47647600	Weak transcription	Aorta	Aorta
6	chr4:47642000-47648600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:47642000-47650800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:47642600-47645800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:47643000-47646400	Enhancers	HSMM	muscle
10	chr4:47643200-47644200	Enhancers	Osteobl	bone
11	chr4:47643200-47645200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:47643200-47645400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:47643200-47649600	Weak transcription	Fetal Heart	heart
14	chr4:47643600-47645400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:47643600-47645800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:47643600-47646200	Enhancers	HSMMtube	muscle
17	chr4:47643800-47644000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
18	chr4:47643800-47644400	Strong transcription	Left Ventricle	heart
19	chr4:47643800-47644800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:47643800-47645400	Enhancers	Fetal Lung	lung
21	chr4:47643800-47645400	Enhancers	Fetal Stomach	stomach
22	chr4:47643800-47646400	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links