Variant report

Variant	rs17465328
Chromosome Location	chr7:109275648-109275649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10269060	0.87[AFR][1000 genomes]
rs1069362	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11761734	0.92[AFR][1000 genomes]
rs13438678	0.92[AFR][1000 genomes]
rs1813235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28893844	0.92[AFR][1000 genomes]
rs67111772	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs711453	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs711456	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs711458	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs711465	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs711466	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs711468	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73430967	0.92[AFR][1000 genomes]
rs820936	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1017184	chr7:109240101-109350011	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17465328	DLD	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109273600-109276000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:109275600-109277000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links