Variant report

Variant	rs17465832
Chromosome Location	chr13:49600394-49600395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49593632..49596233-chr13:49598271..49600480,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11618890	1.00[AMR][1000 genomes]
rs35468616	1.00[ASN][1000 genomes]
rs59746195	1.00[ASN][1000 genomes]
rs74072712	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7983637	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986232	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7986805	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv455882	chr13:49531551-49679157	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv561593	chr13:49531551-49679157	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv900068	chr13:49559790-49605774	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1803100	chr13:49576474-49655941	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49551400-49638800	Weak transcription	Pancreas	Pancrea
2	chr13:49557000-49626800	Weak transcription	Right Ventricle	heart
3	chr13:49568800-49626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:49568800-49627000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:49572000-49604800	Weak transcription	Aorta	Aorta
6	chr13:49573400-49634800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:49581800-49606000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr13:49582000-49601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:49582200-49659000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr13:49582800-49617600	Weak transcription	Liver	Liver
11	chr13:49584000-49616600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:49584200-49649200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr13:49584600-49602600	Weak transcription	Thymus	Thymus
14	chr13:49584600-49613800	Weak transcription	Left Ventricle	heart
15	chr13:49584800-49612400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:49587400-49602400	Weak transcription	Fetal Intestine Small	intestine
17	chr13:49587800-49605200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:49587800-49611400	Weak transcription	Fetal Kidney	kidney
19	chr13:49587800-49626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr13:49592800-49649600	Weak transcription	Fetal Intestine Large	intestine
21	chr13:49593000-49604800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr13:49593400-49611800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr13:49593800-49603000	Weak transcription	Placenta	Placenta
24	chr13:49594800-49636000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr13:49595000-49603800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:49596400-49611600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr13:49596400-49626800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:49596800-49606600	Weak transcription	HepG2	liver
29	chr13:49596800-49609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:49597000-49606000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr13:49597200-49619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr13:49597200-49626600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:49598000-49606800	Weak transcription	NH-A	brain
34	chr13:49598000-49650200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:49598200-49601000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr13:49598200-49603200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr13:49598600-49600800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr13:49598600-49602400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr13:49598600-49602400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr13:49598600-49603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:49598600-49604600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:49598600-49626800	Weak transcription	Osteobl	bone
43	chr13:49598800-49600400	Weak transcription	A549	lung
44	chr13:49598800-49602400	Weak transcription	HSMM	muscle
45	chr13:49598800-49603000	Weak transcription	Dnd41	blood
46	chr13:49598800-49617600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr13:49599000-49601200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr13:49599000-49602000	Weak transcription	Primary T cells from cord blood	blood
49	chr13:49599000-49603000	Weak transcription	Primary B cells from cord blood	blood
50	chr13:49599000-49603800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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