Variant report

Variant	rs17465893
Chromosome Location	chr12:39308763-39308764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:39295565..39299427-chr12:39307532..39310185,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10506129	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10506132	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10876086	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10876149	0.82[CEU][hapmap]
rs11169387	1.00[JPT][hapmap]
rs11169508	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11169547	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11169769	0.87[CEU][hapmap]
rs11169879	0.80[EUR][1000 genomes]
rs11169908	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11609849	0.88[CEU][hapmap]
rs11610886	0.82[EUR][1000 genomes]
rs11612004	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12812262	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12813151	0.82[EUR][1000 genomes]
rs12816546	0.82[EUR][1000 genomes]
rs12827197	0.82[EUR][1000 genomes]
rs12827647	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1349257	0.82[EUR][1000 genomes]
rs1554550	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1562728	0.82[EUR][1000 genomes]
rs1601579	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17464772	0.88[CEU][hapmap]
rs17467376	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17523988	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2056159	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2218762	0.82[EUR][1000 genomes]
rs2388060	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2388174	0.82[EUR][1000 genomes]
rs2388175	0.82[EUR][1000 genomes]
rs2388178	0.82[EUR][1000 genomes]
rs2388179	0.82[EUR][1000 genomes]
rs2892450	0.82[EUR][1000 genomes]
rs2892451	0.82[EUR][1000 genomes]
rs34204495	0.80[EUR][1000 genomes]
rs3914597	0.82[EUR][1000 genomes]
rs4254106	0.82[EUR][1000 genomes]
rs4332556	0.81[EUR][1000 genomes]
rs4411311	0.82[EUR][1000 genomes]
rs4438082	0.82[EUR][1000 genomes]
rs4768548	1.00[CHB][hapmap]
rs7301104	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7308161	0.82[EUR][1000 genomes]
rs7308278	0.82[EUR][1000 genomes]
rs7952765	0.82[EUR][1000 genomes]
rs7958118	0.82[EUR][1000 genomes]
rs7967295	0.82[EUR][1000 genomes]
rs7967776	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7968566	0.82[EUR][1000 genomes]
rs7970850	0.82[EUR][1000 genomes]
rs7972590	0.82[EUR][1000 genomes]
rs7973992	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7976609	0.82[EUR][1000 genomes]
rs925827	0.82[EUR][1000 genomes]
rs925828	0.82[EUR][1000 genomes]
rs925829	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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