Variant report

Variant	rs17466886
Chromosome Location	chr12:40783158-40783159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10784575	0.86[AFR][1000 genomes]
rs10784576	0.86[AFR][1000 genomes]
rs10878496	0.86[AFR][1000 genomes]
rs11176362	0.84[AFR][1000 genomes]
rs11176402	0.83[AFR][1000 genomes]
rs1122621	1.00[JPT][hapmap]
rs11564109	1.00[JPT][hapmap]
rs1427262	1.00[ASN][1000 genomes]
rs17128391	1.00[JPT][hapmap]
rs17444306	1.00[ASN][1000 genomes]
rs17444481	1.00[ASN][1000 genomes]
rs17444494	1.00[ASN][1000 genomes]
rs17444709	1.00[ASN][1000 genomes]
rs17533153	1.00[JPT][hapmap]
rs17599001	1.00[JPT][hapmap]
rs17599042	1.00[JPT][hapmap]
rs17599666	1.00[JPT][hapmap]
rs1834744	0.86[AFR][1000 genomes]
rs1966787	0.86[AFR][1000 genomes]
rs1966788	0.86[AFR][1000 genomes]
rs2098964	0.86[AFR][1000 genomes]
rs2404839	0.83[AFR][1000 genomes]
rs2896981	1.00[ASN][1000 genomes]
rs33962975	1.00[ASN][1000 genomes]
rs3906866	0.86[AFR][1000 genomes]
rs4767983	1.00[JPT][hapmap]
rs4768239	1.00[ASN][1000 genomes]
rs4768246	1.00[ASN][1000 genomes]
rs7309042	1.00[JPT][hapmap]
rs73094979	1.00[ASN][1000 genomes]
rs73107149	1.00[ASN][1000 genomes]
rs7959536	1.00[JPT][hapmap]
rs7960976	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1047639	chr12:40774370-40804386	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40781600-40783400	Enhancers	Placenta	Placenta
2	chr12:40782000-40783600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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