Variant report

Variant	rs17472150
Chromosome Location	chr11:49409112-49409113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10501325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17555964	1.00[AFR][1000 genomes]
rs17556033	1.00[AFR][1000 genomes]
rs17821682	1.00[AFR][1000 genomes]
rs1851985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031086	1.00[AFR][1000 genomes]
rs3960835	0.88[CEU][hapmap];0.83[GIH][hapmap]
rs4080749	1.00[AFR][1000 genomes]
rs4085879	0.95[EUR][1000 genomes]
rs4103565	1.00[AFR][1000 genomes]
rs55659758	1.00[AFR][1000 genomes]
rs55987311	1.00[AFR][1000 genomes]
rs56039736	1.00[AFR][1000 genomes]
rs56259899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61885289	1.00[AFR][1000 genomes]
rs61885290	1.00[AFR][1000 genomes]
rs61885294	1.00[AFR][1000 genomes]
rs61885295	1.00[AFR][1000 genomes]
rs61885296	1.00[AFR][1000 genomes]
rs61885324	1.00[AFR][1000 genomes]
rs61885326	1.00[AFR][1000 genomes]
rs61885338	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61885339	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61885340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61885341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61885342	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61885343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61885344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61885355	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61885356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61886509	1.00[AFR][1000 genomes]
rs61886511	1.00[AFR][1000 genomes]
rs61886512	1.00[AFR][1000 genomes]
rs61886517	1.00[AFR][1000 genomes]
rs61886529	1.00[AFR][1000 genomes]
rs61886530	1.00[AFR][1000 genomes]
rs61886531	1.00[AFR][1000 genomes]
rs61886532	1.00[AFR][1000 genomes]
rs61886534	1.00[AFR][1000 genomes]
rs61886537	1.00[AFR][1000 genomes]
rs61886539	1.00[AFR][1000 genomes]
rs61904162	0.95[EUR][1000 genomes]
rs61904163	0.95[EUR][1000 genomes]
rs61904164	0.95[EUR][1000 genomes]
rs61904167	0.95[EUR][1000 genomes]
rs61904168	0.95[EUR][1000 genomes]
rs6485967	1.00[AFR][1000 genomes]
rs7113939	1.00[AFR][1000 genomes]
rs7116357	1.00[AFR][1000 genomes]
rs7116574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119205	1.00[AFR][1000 genomes]
rs7120140	1.00[AFR][1000 genomes]
rs7122398	1.00[AFR][1000 genomes]
rs7123690	1.00[AFR][1000 genomes]
rs7124497	1.00[AFR][1000 genomes]
rs7126361	1.00[AFR][1000 genomes]
rs7126472	1.00[AFR][1000 genomes]
rs7129346	1.00[AFR][1000 genomes]
rs7129509	1.00[AFR][1000 genomes]
rs7482206	1.00[AFR][1000 genomes]
rs7925435	1.00[AFR][1000 genomes]
rs7925476	1.00[AFR][1000 genomes]
rs7925595	1.00[AFR][1000 genomes]
rs7934696	0.89[CEU][hapmap]
rs7939978	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1044070	chr11:49147743-49448774	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv525454	chr11:49156039-49570587	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv518571	chr11:49162948-49627833	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758269	chr11:49212237-49468966	Bivalent/Poised TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2759825	chr11:49212237-49468966	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv467875	chr11:49310952-49438332	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv554354	chr11:49310952-49438332	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv972017	chr11:49356454-49418958	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv554355	chr11:49357043-49438332	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv2761671	chr11:49359619-49414562	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv897485	chr11:49370834-49458055	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv897486	chr11:49373782-49688837	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv897487	chr11:49390619-49610094	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv897488	chr11:49405112-49570587	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:49408400-49410400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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