Variant report

Variant	rs17472967
Chromosome Location	chr4:79625878-79625879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6533826	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79624800-79626800	Enhancers	K562	blood
2	chr4:79624800-79628800	Enhancers	Fetal Intestine Small	intestine
3	chr4:79625000-79628400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:79625800-79626200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:79625800-79626200	Enhancers	Osteobl	bone
6	chr4:79625800-79626600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:79625800-79626600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:79625800-79626600	Enhancers	NHDF-Ad	bronchial
9	chr4:79625800-79626600	Enhancers	NHEK	skin
10	chr4:79625800-79627000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:79625800-79627000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:79625800-79627000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:79625800-79627000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr4:79625800-79627400	Enhancers	Small Intestine	intestine
15	chr4:79625800-79627600	Enhancers	Brain Angular Gyrus	brain
16	chr4:79625800-79628400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr4:79625800-79628800	Enhancers	Brain Anterior Caudate	brain
18	chr4:79625800-79628800	Enhancers	Fetal Intestine Large	intestine
19	chr4:79625800-79629400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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