Variant report

Variant	rs17477224
Chromosome Location	chr8:119099457-119099458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119046491..119049181-chr8:119099094..119101026,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SAMD12-4	chr8:119097734-119100498	NONHSAT128404

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11562809	1.00[YRI][hapmap]
rs17477420	1.00[YRI][hapmap]
rs4876782	1.00[YRI][hapmap]
rs6985901	1.00[YRI][hapmap]
rs7818887	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119075000-119102000	Weak transcription	Spleen	Spleen
2	chr8:119085600-119100200	Weak transcription	HSMMtube	muscle
3	chr8:119087600-119101800	Weak transcription	Fetal Thymus	thymus
4	chr8:119088000-119100200	Weak transcription	Aorta	Aorta
5	chr8:119088200-119102000	Weak transcription	Lung	lung
6	chr8:119088200-119102000	Weak transcription	Right Ventricle	heart
7	chr8:119089200-119100400	Weak transcription	Fetal Stomach	stomach
8	chr8:119089600-119100400	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:119089800-119102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:119090800-119102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:119092400-119100400	Weak transcription	HMEC	breast
12	chr8:119092400-119102000	Weak transcription	Gastric	stomach
13	chr8:119092400-119104800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:119092600-119100800	Weak transcription	HSMM	muscle
15	chr8:119092600-119110200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:119092800-119100200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:119093200-119100200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:119093800-119102000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:119094000-119100000	Weak transcription	Fetal Intestine Small	intestine
20	chr8:119094000-119101000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:119094200-119100400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:119094200-119117000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr8:119094400-119100200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:119094400-119110200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:119094600-119102000	Weak transcription	Brain Angular Gyrus	brain
26	chr8:119094800-119100400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:119095400-119099600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr8:119095400-119100400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:119095800-119099600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr8:119095800-119102000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:119096000-119100200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:119096400-119099600	Genic enhancers	NHDF-Ad	bronchial
33	chr8:119096800-119100400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:119097000-119100200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:119097000-119100200	Weak transcription	Left Ventricle	heart
36	chr8:119097200-119100400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:119097400-119100200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr8:119097400-119100200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:119097600-119100200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:119097600-119102000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr8:119097600-119113400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr8:119097800-119100200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr8:119098200-119099600	Enhancers	Fetal Lung	lung
44	chr8:119098200-119102000	Enhancers	Liver	Liver
45	chr8:119098400-119099600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:119098400-119100400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:119098400-119100400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:119098400-119102600	Enhancers	Colon Smooth Muscle	Colon
49	chr8:119098400-119102800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr8:119098600-119100200	Strong transcription	NHEK	skin

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