Variant report

Variant	rs17477455
Chromosome Location	chr8:119114689-119114690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119112265..119114853-chr8:119117703..119122505,4	K562	blood:
2	chr8:119110587..119114764-chr8:119114883..119119035,6	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17477413	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17477476	1.00[ASN][1000 genomes]
rs17477497	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17477525	1.00[CHB][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17477580	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17477622	1.00[ASN][1000 genomes]
rs17477629	1.00[AMR][1000 genomes]
rs17477650	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17506336	1.00[CHB][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs17506357	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17506392	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17506426	1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs17506461	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17506489	1.00[CHB][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17506545	1.00[CHB][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17506573	1.00[AMR][1000 genomes]
rs60848112	1.00[AMR][1000 genomes]
rs7009198	1.00[CHB][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73312336	0.83[ASN][1000 genomes]
rs73312339	1.00[ASN][1000 genomes]
rs73312370	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv891412	chr8:119107051-119139385	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
9	nsv932638	chr8:119111068-119115831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119094200-119117000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:119098800-119117800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:119102000-119119600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:119102400-119118200	Weak transcription	Fetal Brain Male	brain
5	chr8:119102600-119117000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:119102600-119120000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:119102800-119117200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:119107200-119119400	Weak transcription	Fetal Kidney	kidney
9	chr8:119109600-119114800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:119109800-119115800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:119110000-119118200	Genic enhancers	Liver	Liver
12	chr8:119110600-119115600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:119110600-119115600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:119110600-119115800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:119110600-119119600	Weak transcription	Brain Anterior Caudate	brain
16	chr8:119110600-119119600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:119111200-119114800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr8:119111400-119118600	Weak transcription	HSMMtube	muscle
19	chr8:119111600-119119800	Weak transcription	Brain Substantia Nigra	brain
20	chr8:119111800-119118200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:119111800-119118400	Weak transcription	Fetal Brain Female	brain
22	chr8:119112000-119117000	Weak transcription	Brain Angular Gyrus	brain
23	chr8:119112000-119118200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:119112200-119115000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:119112200-119116400	Weak transcription	Hela-S3	cervix
26	chr8:119112200-119116800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:119112200-119117200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:119112200-119117200	Weak transcription	Colonic Mucosa	Colon
29	chr8:119112200-119118000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:119112200-119118600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr8:119112200-119119600	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:119112200-119120800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:119112400-119115400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:119112400-119115600	Weak transcription	Esophagus	oesophagus
35	chr8:119112400-119115800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:119112400-119117000	Weak transcription	Fetal Heart	heart
37	chr8:119112400-119117200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:119112400-119117200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:119112400-119118000	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr8:119112400-119119600	Weak transcription	Right Ventricle	heart
41	chr8:119112400-119119600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:119112400-119119800	Weak transcription	Primary B cells from cord blood	blood
43	chr8:119112400-119120600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:119112400-119120600	Weak transcription	Placenta	Placenta
45	chr8:119112400-119120600	Weak transcription	Thymus	Thymus
46	chr8:119112400-119120800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:119112600-119115000	Weak transcription	Pancreas	Pancrea
48	chr8:119112600-119115400	Weak transcription	HMEC	breast
49	chr8:119112600-119115600	Weak transcription	HepG2	liver
50	chr8:119112600-119117000	Weak transcription	Gastric	stomach

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