Variant report

Variant	rs1748364
Chromosome Location	chr1:158160181-158160182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158159135..158160992-chr1:158182164..158184743,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD1B-6	chr1:158160122-158160481	expReg_chr1_16697_-

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1617972	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1617977	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1618045	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1618053	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1619547	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1627504	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1628370	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1629495	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1630031	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1630058	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1633121	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1633122	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1633123	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1633124	0.92[ASN][1000 genomes]
rs1633125	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1633126	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1633127	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633128	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633129	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633130	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633131	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633132	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633133	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1633134	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1690769	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1690771	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1690772	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1690773	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1690774	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1690775	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1690776	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1690777	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1690778	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1690779	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1748362	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748365	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748366	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748368	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1748370	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748371	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748372	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748373	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748374	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1748375	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs973742	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv13585	chr1:158159222-158214160	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158153600-158163400	Weak transcription	Dnd41	blood
2	chr1:158156800-158160400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:158156800-158160800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:158156800-158161000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:158156800-158161000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:158156800-158161200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:158156800-158161200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:158156800-158161400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:158156800-158163200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:158157400-158161400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:158159800-158161000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:158159800-158161800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:158159800-158165400	Weak transcription	Thymus	Thymus

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