Variant report

Variant	rs1748376
Chromosome Location	chr1:158168221-158168222
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD1B-1	chr1:158167712-158169625	ENSG00000176320

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1617972	0.84[AFR][1000 genomes]
rs1617977	0.84[AFR][1000 genomes]
rs1618045	0.84[AFR][1000 genomes]
rs1618053	0.84[AFR][1000 genomes]
rs1619547	0.84[AFR][1000 genomes]
rs1627504	0.84[AFR][1000 genomes]
rs1628340	1.00[ASN][1000 genomes]
rs1628370	0.84[AFR][1000 genomes]
rs1629495	0.84[AFR][1000 genomes]
rs1630031	0.84[AFR][1000 genomes]
rs1630058	0.82[AFR][1000 genomes]
rs1633121	0.84[AFR][1000 genomes]
rs1633122	0.84[AFR][1000 genomes]
rs1633123	0.84[AFR][1000 genomes]
rs1633125	0.84[AFR][1000 genomes]
rs1633126	0.84[AFR][1000 genomes]
rs1633127	0.84[AFR][1000 genomes]
rs1633128	0.83[AFR][1000 genomes]
rs1633129	0.84[AFR][1000 genomes]
rs1633130	0.84[AFR][1000 genomes]
rs1633131	0.84[AFR][1000 genomes]
rs1633132	0.84[AFR][1000 genomes]
rs1633133	0.84[AFR][1000 genomes]
rs1633134	0.84[AFR][1000 genomes]
rs1690768	0.81[EUR][1000 genomes]
rs1690769	0.84[AFR][1000 genomes]
rs1690771	0.84[AFR][1000 genomes]
rs1690772	0.84[AFR][1000 genomes]
rs1690773	0.84[AFR][1000 genomes]
rs1690774	0.84[AFR][1000 genomes]
rs1690775	0.84[AFR][1000 genomes]
rs1690776	0.84[AFR][1000 genomes]
rs1690777	0.84[AFR][1000 genomes]
rs1690778	0.84[AFR][1000 genomes]
rs1690779	0.84[AFR][1000 genomes]
rs1748361	0.83[EUR][1000 genomes]
rs1748362	0.84[AFR][1000 genomes]
rs1748365	0.84[AFR][1000 genomes]
rs1748366	0.84[AFR][1000 genomes]
rs1748368	0.81[AFR][1000 genomes]
rs1748369	0.99[ASN][1000 genomes]
rs1748370	0.84[AFR][1000 genomes]
rs1748371	0.84[AFR][1000 genomes]
rs1748372	0.84[AFR][1000 genomes]
rs1748373	0.84[AFR][1000 genomes]
rs1748374	0.84[AFR][1000 genomes]
rs1748375	0.84[AFR][1000 genomes]
rs2518475	0.99[ASN][1000 genomes]
rs973742	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv13585	chr1:158159222-158214160	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1814455	chr1:158160528-158200312	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv508626	chr1:158161932-158242158	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158164000-158172800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:158166000-158168600	Weak transcription	Thymus	Thymus
3	chr1:158166000-158169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:158167200-158169200	Genic enhancers	Dnd41	blood
5	chr1:158167200-158169400	Strong transcription	Fetal Thymus	thymus
6	chr1:158167200-158170400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:158168000-158172800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links