Variant report

Variant	rs17484747
Chromosome Location	chr8:119207355-119207356
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17477831	1.00[AFR][1000 genomes]
rs17507585	1.00[EUR][1000 genomes]
rs28370867	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	esv1822901	chr8:119207029-119214396	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119199200-119207600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:119199600-119208000	Weak transcription	HSMMtube	muscle
3	chr8:119200000-119207600	Weak transcription	Pancreas	Pancrea
4	chr8:119200800-119218800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:119201400-119209400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:119202600-119207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:119202600-119207800	Weak transcription	HMEC	breast
8	chr8:119203000-119207600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:119203000-119207600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:119203400-119207800	Weak transcription	NHDF-Ad	bronchial
11	chr8:119203600-119207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:119203800-119207400	Weak transcription	Aorta	Aorta
13	chr8:119203800-119207600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:119203800-119207600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:119203800-119207800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:119203800-119207800	Weak transcription	Osteobl	bone
17	chr8:119203800-119215200	Weak transcription	Liver	Liver
18	chr8:119204600-119208400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:119205400-119207800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:119206000-119207600	Weak transcription	Fetal Intestine Small	intestine
21	chr8:119206200-119212200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:119206400-119214400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:119206600-119209000	Weak transcription	Fetal Intestine Large	intestine
24	chr8:119206600-119214200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:119206800-119208000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:119206800-119209200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:119206800-119210200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr8:119206800-119210200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr8:119207000-119208000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:119207000-119208400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:119207000-119208400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:119207000-119209800	Enhancers	NH-A	brain
33	chr8:119207200-119210000	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links