Variant report
| Variant | rs17488134 |
|---|---|
| Chromosome Location | chr10:45135344-45135345 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11239241 | 1.00[ASN][1000 genomes] |
| rs11239243 | 1.00[ASN][1000 genomes] |
| rs11239244 | 1.00[ASN][1000 genomes] |
| rs12248300 | 1.00[ASN][1000 genomes] |
| rs12248312 | 1.00[ASN][1000 genomes] |
| rs12254449 | 1.00[ASN][1000 genomes] |
| rs12256226 | 1.00[ASN][1000 genomes] |
| rs12261254 | 1.00[ASN][1000 genomes] |
| rs1325159 | 1.00[ASN][1000 genomes] |
| rs55972562 | 1.00[ASN][1000 genomes] |
| rs56194192 | 1.00[ASN][1000 genomes] |
| rs56317408 | 1.00[ASN][1000 genomes] |
| rs56373576 | 0.87[EUR][1000 genomes] |
| rs61852420 | 1.00[ASN][1000 genomes] |
| rs61852469 | 1.00[ASN][1000 genomes] |
| rs61852472 | 1.00[ASN][1000 genomes] |
| rs61852502 | 1.00[ASN][1000 genomes] |
| rs61852506 | 1.00[ASN][1000 genomes] |
| rs61855372 | 1.00[ASN][1000 genomes] |
| rs7067638 | 1.00[ASN][1000 genomes] |
| rs7069436 | 1.00[ASN][1000 genomes] |
| rs7073018 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7073488 | 1.00[ASN][1000 genomes] |
| rs7076361 | 1.00[ASN][1000 genomes] |
| rs7077518 | 1.00[ASN][1000 genomes] |
| rs7077750 | 1.00[ASN][1000 genomes] |
| rs7083891 | 1.00[ASN][1000 genomes] |
| rs7097670 | 1.00[ASN][1000 genomes] |
| rs7894589 | 1.00[ASN][1000 genomes] |
| rs7894867 | 1.00[ASN][1000 genomes] |
| rs7909031 | 1.00[ASN][1000 genomes] |
| rs7918692 | 1.00[ASN][1000 genomes] |
| rs955649 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422287 | chr10:45044161-45257684 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv831843 | chr10:45084703-45280032 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45135200-45135400 | Enhancers | Ovary | ovary |
| 2 | chr10:45135200-45136800 | Enhancers | Dnd41 | blood |
