Variant report

Variant	rs17488750
Chromosome Location	chr4:16530791-16530792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16893618	1.00[YRI][hapmap]
rs73242333	0.82[EUR][1000 genomes]
rs7660353	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv593780	chr4:16519719-16557143	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1005782	chr4:16521109-16554088	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv537049	chr4:16521109-16554088	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16522800-16538000	Weak transcription	Lung	lung
2	chr4:16523000-16531000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:16526200-16533000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:16526400-16539600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:16526800-16532600	Weak transcription	NHLF	lung
6	chr4:16527200-16531800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:16527200-16532000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:16527200-16545800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:16527600-16531800	Weak transcription	Fetal Lung	lung
10	chr4:16528400-16531800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:16530200-16531200	Strong transcription	Fetal Stomach	stomach
12	chr4:16530400-16532000	Weak transcription	Right Atrium	heart
13	chr4:16530400-16532400	Weak transcription	Left Ventricle	heart
14	chr4:16530600-16531800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:16530600-16533000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:16530600-16537400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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