Variant report

Variant	rs17489724
Chromosome Location	chr7:141008038-141008039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10215259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233042	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10244120	0.82[AMR][1000 genomes]
rs10251250	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10254214	0.82[AMR][1000 genomes]
rs10254470	0.82[AMR][1000 genomes]
rs10488012	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11974641	0.82[AMR][1000 genomes]
rs11977019	0.82[AMR][1000 genomes]
rs11977665	0.82[AMR][1000 genomes]
rs17490126	0.82[AMR][1000 genomes]
rs1807329	0.88[EUR][1000 genomes]
rs28463115	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56190564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62486671	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6956673	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800645	chr7:141007010-141012015	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17489724	TAS2R41	cis	parietal	SCAN
rs17489724	GSG1L	trans	cerebellum	SCAN
rs17489724	OR2A5	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140994400-141018000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:141004600-141014200	Weak transcription	Right Atrium	heart
3	chr7:141005000-141013000	Weak transcription	Right Ventricle	heart
4	chr7:141006200-141008200	Weak transcription	Left Ventricle	heart
5	chr7:141006200-141012600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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