Variant report

Variant	rs17491776
Chromosome Location	chr2:50183818-50183819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1013597	0.86[JPT][hapmap]
rs11125278	0.82[JPT][hapmap]
rs11885824	0.91[JPT][hapmap]
rs11902804	0.86[JPT][hapmap]
rs12617277	0.90[JPT][hapmap]
rs12621581	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12998798	0.82[JPT][hapmap]
rs13007882	0.90[JPT][hapmap]
rs13016321	0.86[JPT][hapmap]
rs13022108	0.86[JPT][hapmap]
rs1345562	0.82[JPT][hapmap]
rs1363046	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1421586	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1421594	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17039448	0.81[JPT][hapmap]
rs17039452	0.82[JPT][hapmap]
rs17039454	0.82[JPT][hapmap]
rs17039456	0.86[JPT][hapmap]
rs17039472	0.86[JPT][hapmap]
rs17039484	0.91[JPT][hapmap]
rs17039508	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17039529	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs17039564	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17039573	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17039575	1.00[CEU][hapmap]
rs17039577	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs17039582	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs17039592	0.82[JPT][hapmap]
rs17439140	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2193868	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2241750	0.90[JPT][hapmap]
rs2241752	0.85[JPT][hapmap]
rs4143112	0.90[JPT][hapmap]
rs59672611	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59973985	0.83[EUR][1000 genomes]
rs6713560	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6713940	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6745765	0.81[JPT][hapmap]
rs6758043	0.91[JPT][hapmap]
rs725323	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7573698	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7574241	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7598993	0.86[JPT][hapmap]
rs920033	0.91[JPT][hapmap]
rs920035	0.91[JPT][hapmap]
rs9679140	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs983094	1.00[CEU][hapmap];0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932839	chr2:50181785-50225697	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50141600-50187400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:50176000-50185600	Weak transcription	Fetal Brain Female	brain
3	chr2:50176200-50186600	Weak transcription	Brain Angular Gyrus	brain
4	chr2:50178400-50186600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:50182000-50184200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:50182000-50185200	Weak transcription	Fetal Brain Male	brain

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